Paranjothy, Manikandan

Halogen substituted analogues of formaldehyde, HXCO (X = F, Cl, Br, and I), play a crucial role in the degradation of stratospheric ozone. Several spectroscopic and quantum chemistry investigations of the dissociation chemistry of formyl halides have been reported in the literature. Due to their importance in combustion and atmospheric chemistry, we investigated the gas phase dissociation of formyl halides using electronic structure theory, direct chemical dynamics simulations, and Rice-Ramsperger-Kassel-Marcus rate constant calculations. Chemical dynamics simulations were performed using density functional B3LYP/6-31G* theory with suitable effective core potentials for the halogen atoms. Simulations showed multiple pathways and mechanisms for the dissociation of formyl halides. The major reaction products were HX + CO which formedviadirect and indirect pathways. Trajectory lifetime distribution calculations indicated non-statistical dissociation dynamics.

Two important methods for enhancing gas sensing performance are vacancy/defect and interlayer engineering. Tin sulfide (SnS2) has recently attracted much attention for sensing of the NO2 gas due to its active surface sites and tunable electronic structure. Herein, SnS2 has been synthesized by the chemical vapor deposition (CVD) method followed by nitrogen plasma treatment with different exposure times for fast detection of NO2 molecules. Plasma treatment created a substantial number of surface vacancies on SnS2 flakes, which were controlled by the exposure period to modify the surface of flakes. After 12 min of nitrogen plasma treatment, SnS2 nanoflakes show considerable improvement in NO2 sensing characteristics, including a high sensing response of ∼264% toward 100 ppm NO2 at 120°C. The enhancement in the relative response of the sensor is due to the electronic interaction between NO2 molecules and the S vacancies on the surface of SnS2. Density functional theory (DFT) computations indicate that the S-vacancy defects on the surface dominate the effective NO2 detection and the NO2 adsorption mechanism transition from physisorption to chemisorption. Adsorption kinetics of the NO2 gas over SnS2 nanoflake-based chemiresistor sensors were studied using the Lee and Strano model [ Langmuir 2005, 21(11), 5192−5196 ]. The irreversible rate of the reaction for various NO2 concentrations exposed to the gas sensor is extracted using this model, which also appropriately describes the response curves. The forward rate constant of the irreversible gas sensor increased with the increase of the N2 plasma treatment time and reached the maximum in the 12 min plasma-treated sample. Through defect engineering, this research may open up new vistas for the design and synthesis of 2D materials with enhanced sensing properties.

The role of second-order saddle in the isomerization dynamics was investigated by considering the E-Z isomerization of guanidine. The potential energy profile for the reaction was mapped using the ab initio wavefunction method. The isomerization path involved a torsional motion about the imine (C-N) bond in a clockwise or an anticlockwise fashion resulting in two degenerate transition states corresponding to a barrier of 23.67 kcal/mol.An alternative energetically favorable path (~1 kcal/mol higher than the transition states) by an in-plane motion of the imine (N-H) bond via a second-order saddle point on the potential energy surface was also obtained. The dynamics of the isomerization was investigated by ab initio classical trajectory simulations. The trajectories reveal that isomerization happens via the transition states as well as the second-order saddle. The dynamics was found to be nonstatistical with trajectories exhibiting recrossing and the higher energy second-order saddle pathway preferred over the traditional transition state pathway. Wavelet based time-frequency analysis of internal coordinates indicate regular dynamics and existence of long-lived quasi-periodic trajectories in the phase space.

Perbenzoic acid (a weak organic acid) and its conjugate base (perbenzoate anion, C6H5C(O)O2−) are important organic reagents used extensively in synthetic chemistry. A few studies are available in the literature on the structure and reactivity of the perbenzoate anion. Gas phase dissociation of the perbenzoate anion and its substituted analogues by collision induced dissociation mass spectrometry experiments revealed carbon dioxide (CO2) loss as the major dissociation pathway. CO2 loss was proposed to occur via intramolecular nucleophilic attack by the negatively charged oxygen atom at the ipso or ortho position of the benzene ring. In the present work, we investigated decomposition pathways of perbenzoate anion in the gas phase via classical direct chemical dynamics simulations to establish the atomic level reaction mechanisms. Classical trajectories were integrated on-the-fly using the density functional B3LYP/6-31+G* level of electronic structure theory. Removal of CO3, CO2 from the perbenzoate anion and isomerization to an oxydioxirane intermediate were the primary reaction pathways observed in the simulations. In a major fraction of the trajectories, elimination of CO2 happened via initial CO3 loss from the perbenzoate anion followed by removal of O atom from the unstable neutral CO3 molecule.

Design and development of multifunctional materials have drawn incredible attraction in recent years. Herein, we report the design and construction of versatile star-shaped intramolecular charge transfer (ICT)-coupled excited-state intramolecular proton transfer (ESIPT)-active mechanoresponsive and aggregation-induced emissive (AIE) luminogen triaminoguanidine-diethylaminophenol (LH3) conjugate from simple precursors triaminoguanidine hydrochloride and 4-(N,N-diethylamino)salicylaldehyde. Solvent-dependent dual emission in nonpolar to polar protic solvents implies the presence of ICT-coupled ESIPT features in the excited state. Aggregation-enhanced emissive feature of LH3 was established in the CH3CN/water mixture. Furthermore, this compound exhibits mechanochromic fluorescence behavior upon external grinding. Fluorescence microscopy images of pristine, crystal, and crushed crystals confirm the naked-eye mechanoresponsive characteristics of LH3. In addition, LH3 selectively sensed a Cu2+ ion through a colorimetric and fluorescence "turn-off" route, and subsequently, the LH3-Cu2+ ensemble could act as a selective and sensitive sensor for S2- in a "turn-on" fluorescence manner via a metal displacement approach. Reversible "turn-off-turn-on" features of LH3 with Cu2+/S2- ions were efficiently demonstrated to construct the IMPLICATION logic gate function. The Cu2+/S2--responsive sensing behavior of LH3 was established in the paper strip experiment also, which can easily be characterized by the naked eye under daylight as well as a UV lamp (λ = 365 nm).

Diazenes are an important family of organic compounds used widely in synthetic and materials chemistry. These molecules have a planar geometry and exhibit cis-trans isomerization. The simplest of all these molecules-diazene (N2H2)-has been subjected to several experimental and theoretical studies. Two mechanisms have been proposed for the cis-trans isomerization of diazene, which are an in-plane inversion and an out-of-plane torsion. The activation energies for these pathways are similar and the competition between these two mechanisms has been discussed in the literature based on electronic structure theory calculations. Three decades ago, a classical dynamics investigation of diazene isomerization was carried out using a model Hamiltonian and it was indicated that the in-plane inversion is forbidden classically because of a centrifugal barrier and the out-of-plane torsion is the only isomerization pathway. In the present work, we investigated the cis-trans isomerization dynamics of diazene using ab initio classical trajectory simulations at the CASSCF(2,2)/aug-cc-pVDZ level of electronic structure theory. The simulation results confirmed the presence of the aforementioned centrifugal barrier for the inversion and torsion was the only observed pathway. The calculations were repeated for a similar system (difluorodiazene, N2F2) and again the centrifugal barrier prevented the inversion pathway.

Aminohydroxymethylene (H2N-C¨-OH) is the simplest aminooxycarbene which is a heteroatom stabilized carbene. This highly reactive molecule was prepared in an Ar matrix in a recent experimental work. Unimolecular reactivity of this astrochemically important molecule was investigated and only fragmentations were identified contrary to the observations of both fragmentations and intramolecular rearrangements in other hydroxycarbenes. These rearrangement reactions form the corresponding imine and carbonyl compounds. In the present work, direct chemical dynamics simulations of unimolecular chemistry of aminohydroxymethylene were performed in the gas phase to study atomic level dissociation mechanisms. Classical trajectories were generated on-the-fly using potentials and gradients computed at the density functional B3LYP/6-31+G∗ level of electronic structure theory. Simulation results showed that intramolecular rearrangements accompany fragmentations during the unimolecular decay process of aminohydroxymethylene. However, the average lifetime of the intermediate isomers were found to be only few picoseconds which might not have been long enough for detection in the experiments.

The proton transfer reaction H3+ + CO → HCO+/HOC+ + H2 has gained considerable attention in the literature due to its importance in interstellar chemistry. The reaction products - formyl cation (HCO+) and isoformyl cation (HOC+) - are known to initiate multiple chemical reaction networks, resulting in complex molecules found in space. Several experimental and theoretical studies probing the structure and energetics of the [H3CO]+ system, HCO+/HOC+ product branching ratios, reaction mechanisms, etc., have been reported in the literature. In the present work, we investigated the H3+ + CO bimolecular reaction in the gas phase using direct dynamics methodology. The simulation conditions were chosen to mimic recently reported velocity map imaging experiments on the same reaction. The calculations were performed using the density functional PBE0/aug-cc-pVDZ level of electronic structure theory. Internal energy and scattering angle distributions of reaction products found from the simulations are in qualitative agreement with the experiment. However, the product branching ratios at low collision energies were in contrast with the experimental predictions. Interesting dynamical features were observed in the simulations, and detailed atomic level mechanisms are presented.

Merrifield resin-anchored pyridines were prepared and applied as reusable mediators for trans-selective cascade synthesis of 2,3-dihydroindoles. The developed approach relied on in situ N-ylide formation followed by Michael substitution reactions. The cascade reaction was also carried out efficiently with simple pyridine. The products were further transformed into synthetically valuable compounds, and supported pyridine was reused for multiple cycles. Density functional theory calculations confirmed the trans-selectivity as the lower-energy pathway.

γ-Ketohydroperoxide [3-(hydroperoxy)propanal] is an important reagent in synthetic chemistry and, in particular, oxidation reactions. It is considered to be a precursor for secondary organic aerosol formation in the troposphere. Due to enhanced reactivity and limitations associated with analytical techniques, theoretical methods have been employed to study the unimolecular reactivity of hydroperoxides. A number of automated reaction discovery techniques have been used to study the reactivity of γ-ketohydroperoxide, and a large number of reactions have been reported in such studies. In the present work, we have investigated the unimolecular reaction dynamics of this molecule using electronic structure theory calculations and direct chemical dynamics simulations to assess the relevance of different reaction pathways. Classical trajectories were launched from the reactant well with fixed amounts of total energies and integrated on-the-fly using density functional B3LYP/6-31+G∗ model chemistry. Three dissociation channels among the previously reported reactions were identified as important. Korcek decomposition, which was proposed earlier as a source of carbonyl compounds from thermal decomposition of γ-ketohydroperoxide, was not observed in the present high-temperature simulations. However, trajectories showed the formation of carbonyl compounds such as aldehydes via other pathways. Results are compared with previous studies, and detailed atomic-level reaction mechanisms are presented.